Screen candidate catalysts (metal + ligand/support combinations) for a target reaction by featurizing candidates, predicting relevant descriptors (binding energies, electronic descriptors) with Paramus models/engines, and ranking by predicted activity/selectivity proxies.When to use: a user asks “which catalyst candidate should I try for reaction X?”.Multi-tool WORKFLOW with catalysis judgment.
Paramus — Catalyst Candidate Screen
Overview
Featurize metal/ligand candidates, predict activity-relevant descriptors, and rank by proxies for activity/selectivity. The value is the screening loop + catalysis judgment, not one descriptor.
Guidance vs execution: descriptors and energies come from tested Paramus QM/ML tools. Do not estimate binding energies in ad-hoc code.
When to Use
- Ranking a set of catalyst candidates for a target transformation
- Prioritizing metal/ligand combinations before experiment Do not use for: full microkinetic modeling (hand off to the kinetics engine).
Workflow
Candidate catalysts + target reaction / key intermediate
↓ 1. Build & validate structures → metal-ligand / surface models
↓ 2. Electronic / geometric descr. → Paramus descriptor tools
↓ 3. Binding / activation energies → Paramus QM engine or ML surrogate
↓ 4. Rank by activity/selectivity proxy → scaling-relation / descriptor model
↓ 5. Report → ranked candidates + descriptors + provenance
Procedure
- Discover tools via
search/get_schema("adsorption energy", "electronic descriptor", "QM single point"). - Build and validate each catalyst model; report failures.
- Compute the activity-relevant descriptors/energies with provenance.
- Rank using the appropriate proxy (e.g. binding-energy scaling relation); state the rule.
- Report ranked candidates with descriptors, proxy value, and confidence.
Domain Judgment
- Descriptor-based ranking is a prioritization, not a rate — never report turnover numbers.
- Beware scaling-relation limits; flag candidates far from the model's domain.
- Selectivity often trades against activity — present both, don't collapse to one score blindly.
Fallbacks
- QM engine unavailable → rank on ML/descriptor proxies; clearly mark reduced fidelity.
- Endpoint unreachable → stop and report; no local energy estimates.
Tools this skill may use
Candidate deterministic tools an agent is likely to route to when running this skill. The skill decides which to call at runtime.
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Brain HPC Ase Adsorption
Materials ScienceFind adsorption sites on a surface slab and place an adsorbate (atom or molecule) at top, bridge, hollow, fcc or hcp sites, then compute the adsorption/binding energy for heterogeneous catalysis and surface science, optionally optimizing the adsorbate-surface geometry with an ASE calculator (e.g. EMT). The cleanest way to chain after brain_hpc_ase_surface is to pass the 'artifact_id' it returned. You may instead pass the slab inline via 'slab' (the surface output_content) or as a 'slab_file' path. Do NOT invent a filename - only use an artifact_id or path a previous step actually returned. -
Brain HPC Ase Surface
Materials ScienceBuild surface slab from a bulk structure. The cleanest way to chain after brain_hpc_ase_build is to pass the 'artifact_id' that build returned. You may instead pass inline 'bulk' XYZ content (the build output_content), or an input_file path. Do NOT invent a filename - only use an artifact_id or path that a previous step actually returned. -
Brain HPC Ase Neb
Quantum ChemistryNudged Elastic Band (NEB) calculation for reaction paths. -
Brain HPC Ase Single Point
Quantum ChemistryRun an ASE single-point energy calculation. Computes energy, forces, and stress using the specified calculator (EMT, LJ, Morse, or external DFT).
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Used in these use cases
Customer scenarios that orchestrate this skill end-to-end.