Screen candidate molecules for selectivity and off-target risk by predicting activity against anti-targets (hERG, CYPs, key receptors) and profiling similarity to known liabilities using Paramus BRAIN models, then flagging selectivity concerns.When to use: a user asks “is this compound selective / what might it hit off-target?”.Multi-tool WORKFLOW with safety-pharmacology judgment.
Paramus — Selectivity & Off-Target Screen
Overview
Predict anti-target activity and profile similarity to known liabilities, then flag selectivity concerns and a safety tier. The value is the fused off-target risk view, not a single prediction.
Guidance vs execution: anti-target predictions come from tested BRAIN models with provenance. Do not assert off-target risk from model memory.
When to Use
- Assessing selectivity / safety-pharmacology risk of hits or leads
- Flagging hERG / CYP / promiscuity concerns before advancing Do not use for: definitive tox prediction (hand off to the regulatory tox workflow).
Workflow
Candidate set + (optional) primary target
↓ 1. Parse & standardize → Paramus cheminformatics tool
↓ 2. Anti-target predictions → BRAIN models (hERG, CYP isoforms, key receptors)
↓ 3. Liability similarity → similarity to known off-target/toxicophore sets
↓ 4. Selectivity assessment → primary vs anti-target margin (if primary given)
↓ 5. Report → per-compound risk flags + tier + provenance
Procedure
- Discover tools via
search/get_schema("hERG prediction", "CYP inhibition", "similarity search"). - Standardize inputs; quarantine failures.
- Predict anti-target activities; capture confidence + model versions.
- Profile similarity to known liability sets; flag close matches.
- If a primary target activity is provided, compute the selectivity margin.
- Report risk flags, selectivity margin, and a safety tier with rationale + versions.
Domain Judgment
- A predicted off-target hit is a flag to test, not a verdict — state confidence.
- Selectivity is a margin, not a binary; report the ratio, not just pass/fail.
- Structural similarity to a liability is a warning even absent a model hit.
Fallbacks
- An anti-target model missing → screen on available anti-targets; mark gaps.
- Endpoint unreachable → stop and report; no local off-target heuristics.
Tools this skill may use
Candidate deterministic tools an agent is likely to route to when running this skill. The skill decides which to call at runtime.
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Calculate Similarity
Molecular ChemistryCalculate Tanimoto similarity between two molecules -
Brain HPC Openbabel Similarity
Molecular ChemistryCalculate molecular similarity between two structures. -
Generate Morgan Fingerprint
Molecular ChemistryGenerate Morgan (circular) fingerprints for a molecule. Morgan fingerprints are widely used for similarity searching and machine learning applications.
Browse the full deterministic layer in the tool browser.
Used in these use cases
Customer scenarios that orchestrate this skill end-to-end.